Human Omics database for
the Generation of iPS and Normal Cells

What is SHOGoiN

SHOGoiN Cell Database is a repository for accumulating and integrating diverse human cell information to support a wide range of cell research at the single-cell resolution. It is a significant extension of the world-first human cell database,CELLPEDIA (Database 2011). compass The database consists of several modules that store cell lineage maps, transcriptome, methylome, cell conversions, cell type markers, and cell images with morphology data curated from public as well as contracted resources, based on sophisticated cell taxonomy.

What's New

  • Dec-01-2021

    • Database was updated.
      Cell Marker now contains new 200 markers from HCL.
  • Sep-01-2021

    • Database was updated.
      Taxonomy and Methylome were updated.
      6,161 methylome samples added.
  • Jan-01-2021

    • Database was updated. Methylome was updated. 243 methylome samples added.
  • Nov-01-2020

    • Database was updated. Methylome was updated. 200 methylome samples added.

SHOGoiN Data Modules

Assay data modules

  • Easy Marker Search

Assay Data Summary

Assay Type

Tissue Type

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Need more wide display.

SHOGoiN Data Selector

  • Animal

  • Assay Type

    Transcriptome (3003)
    Methylome (3682)
    Cell Marker (2724)
    Image (1793)
  • Tissue Type

    Brain (3490)
    Spleen (1615)
    Early embryonic tissue (1363)
    Blood (607)
    Eye (554)
    Bone marrow (369)
    Genitalia (362)
    Muscle (343)
          Show more

SHOGoiN Standards and Tools

Integrated Stem Cell Database

  • Cell Line Search  

    Updated on 2022/01/28 (12,559 entries)